ARKdB.org -farm animal database hosted at the Roslin bioinformatics group
Chick EST dB - Database from BBSRC (UK) with useful EST info and RNAi
ChickNet - chicken genome
Geisha- g. gallus EST and in situ hybr.
GSC - chicken genome
PCR primers - PCR primers designed using published chicken gene sequence
UCSC Genome browser -BLAT search & genome browser
US Poultry Genome Project - genome
University of Delaware - chick EST dB
TIGR- genome sequences
Ambion useful info about RNAi
Chick.umist -RNAi for chicken sequences
Database of siRNA's -@ the Karolinska
Promega siRNA designer -tool for designing siRNAs
pSilencer -insert design tool- for hairpin and overhang into pSilencer expression vectors
siDirect2.0 - siRNA prediction - works for human, mouse, rat, dog & chicken
Decor - siRNA prediction program - mouse, rat, human, chick & zebrafish
BLAST- Genome comparison tool
BLAT search - UCSC Genome browser
OMIM- genomic disease database
UNIGENE- Human gene sequences
IMCB - FUGU Genome project- more sequnce data for Fugo rubripes
Fugu Ensemble- a joint project between IMCB and the EMBL-EBI to produce automatic annotation of Fugu Genome.
JGI Fugo- sequnces for Fugo rubripes
Fugu Ensemble- a joint project between IMCB and the EMBL-EBI to produce automatic annotation of Fugu Genome.
InterProScan- motif finder.
Prosite- motif finder.
Signal Scan- Web service.
SignalP 3.0- Signal peptide prediction tool.
Expasy - Expert Protein Analysis system
GeneMapAnnotator- geneMAPP annotator and pathway profiler
jambw tools a few useful conversion tools
IHOP - information hyperlinked over proteins
ReadSeq- sequence format converter
Repeat Masker- Utility for identifying nucleotide repeats.
NEI-Bank
PCR primer Stats - resource for calculating melting temp of oligo's, GC content, and many sequence manipulation functions
Regulatory sequence identification- "Nature"- Bioinformatics for the bench biologist
MAPPER- Multigenome analysis of positions and patterns of elements & regulation