CHRONOS cyclostratigraphy

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database laboratory toolbox MyCHRONOS

Toolbox: Visualize | Interpolate | Correlate | Spectral Analysis | Filtering | Tuning | Modeling | Other Tools

See DEMOS Laboratory for a screenshot demonstration of planned tools.

The pointers below presently link to publically available software and executable modules with visualization and analysis elements under consideration for the future CHRONOS-Climate Cycles online visualization and analysis toolkits.

(1) Visualize

    CHRONOS Age-Depth Program (ADP)-plots age-depth data, and allows interactive fitting of a line of correlation or age model. [Requires Java.]
    Oz Machine--an online X-Y plotting tool for well-logging applications being adapted for CHRONOS (Kansas Geological Survey). [Requires Java 1.3.1 (or higher).]
    Generic Mapping Tools--an open source collection of ~60 tools for visualizing multiple-dimension data sets, outputting EPS illustrations ranging from simple x-y plots through contour maps to artificially illuminated surfaces and 3-D perspective views (School of Ocean & Earth Science & Techonology, University of Hawaii). [Runs on UNIX, LINUX.]
    Gnuplot--a portable command-line driven interactive plotting utility. In 2D, it draws line, point, dot, box, histogram graphs or vector fields; in 3D, line, point and dot surfaces, color or grayscale surfaces [For UNIX, IBM OS/2, MS Windows, DOS, Apple Macintosh, VMS, Atari and many other platforms.]
    PanPlot--a visualization tool for the information system PANGAEA. It can be used as a stand-alone application or started automatically by the information system to plot data versus depth or time or in a ternary view (Pangaea Network). [For Mac and Windows.]
    Core Log Integration Platform--a set of graphic, interactive data analysis products for depth-merging and integrating core and downhole log data (Lamont-Doherty Earth Observatory). [Runs on Sun workstations using Solaris and the OpenWindows, Motif (mwm), or CDE (dtwm) window managers.]

(2) Interpolate

    Analyseries--interpolation and resampling of unevenly spaced depth (time) series to even spacings. [MacOS 8 and 9.]
    ARAND--interpolation of unevenly spaced depth (time) series to even spacings (Brown University). [MacOS 8 and 9.]

(3) Correlate

    Analyseries--interactive tuning and cross-correlation analysis. [MacOS 8 and 9.]
    Match 2.0--aligns data series using dynamic programming (Brown University). [Requires a command line interface, Unix-style OS, Cygwin under Windows, or MacOS 10; portable to any platform with C++ compiler]
    Cross-Correlation Maximizer--correlation of a depth (time) series to a reference (target) series by interactively maximizing their cross-correlation (MIT). [Matlab.]
    Crossdate--interactive graphic application to date and compose master chronologies from tree-ring samples (University of Arizona). [For Sun Solaris and Linux operating systems on PC and UNIX Workstation hardware platforms.]
    Cross-Correlator--program used to correlate meter-scale cycles from two sections; running correlation coefficients between the two sections and their confidence levels are calculated. (University of Georgia). [Mac OS9 and OSX.]

(4) Spectral Analysis

    SSA-MTM Toolkit--spectral analysis of paleoclimatic records using Blackman-Tukey, multiple taper (with significance testing), singular spectrum, and maximum entropy methods (UCLA-Theoretical Climate Dynamics program). [Unix on SUN, IBM/AIX, SGI, DEC,HP-UX, to Linux on PC, and to Mac OS X.]
    Multi-taper spectral techniques--MTM spectral analysis (evolutionary and coherency options), robust noise estimation, and MTM-SVD multivariate signal analysis (University of Virginia). [FORTRAN.]
    Analyseries--spectral analysis of paleoclimatic records by periodogram, Blackman-Tukey (also cross spectra), multiple taper method and maximum entropy. [MacOS 8 and 9.]
    Multi-taper spectral analysis--scripts that compute multi-taper power spectra with confidence limits, and multi-taper coherency and cross phase with signficance and confidence limits (MIT). [Matlab.]
    SPECTRUM--Lomb-Scargle spectral analysis of unevenly spaced time series in combination with Welch overlapping; outputs include harmonic analysis, power spectra, and cross-spectra (University of Bremen). [DOS/Windows]
    REDFIT--First-order autoregressive (AR1) fit of unevenly spaced time series, to test if time series spectral peaks are significant against an equivalent AR1 background. (University of Bremen). [DOS/Windows]
    ARAND--Blackman Tukey power and cross spectra (Brown University). [MacOS 8 and 9.]
    DSP-Rice Software--digital signal processing freeware (Rice University DSP Group). [Matlab and C codes; Matlab GUIs and Java applets.]
    ION's Interactive Wavelets--an ION (IDL On the Net) application for continuous wavelet transformation of time series (Research Systems, Inc.). [ION Script; Java-enabled browser]
    Practical Guide to Wavelet Analysis--Wavelet analysis with significance and confidence testing (Program in Atmospheric and Oceanic Sciences, University of Colorado). [Java enabled browser.]

(5) Filtering

    DSP Design Performance--freely usable digital filter design applets and DSP tutorials and code segments. [Java-enabled browser; works with IE 5.5]
    Filter Design Algorithms--Matlab codes for FIR and IIR filter design (Rice University). [Matlab.]
    Analyseries-- Applications for Gaussian bandpass filters and smoothing. [MacOS 8 and 9.]
    ARAND--Applications for bandpass, high pass and low pass filtering (Brown University). [MacOS 8 and 9.]

(6) Tuning

    Analyseries--interactive tuning of a depth (time) series to a reference (target) series. [MacOS 8 and 9.]
    Cross-Correlation Maximizer--tuning of a depth (time) series to a reference (target) series by interactively maximizing their cross-correlation (MIT). [Matlab.]
    Match 2.0--aligns data series using dynamic programming (Brown University). [Requires a command line interface, Unix-style OS, Cygwin under Windows, or MacOS 10; portable to any platform with C++ compiler]

(7) Modeling

    Analyseries-- Applications for daily and mean insolation, forced by orbital parameters of Berger (1978) or Laskar (1990). [MacOS 8 and 9.]
    Berger (1978)-- Original code and orbital parameter arguments of Berger (1978). [FORTRAN.]
    La1993-- Orbitally forced insolation computations with adjustable parameters for tidal deceleration and dynamic ellipticity (Institut de Mécanique Céleste, Bureau des Longitudes, Paris). [FORTRAN code.]
    Solar-- Module to calculate solar radiation time series for any latitude, month, and dt, forced by orbital parameters of Berger (1978) or Laskar (1990) (Brown Univ.). [Mac only.]
    Insolation Codes-- Executable modules based on Berger (1978) and Laskar et al. (1993) (Virginia Tech). [MS Windows, Excel.]
    La2004--Orbitally forced insolation computations with adjustable parameters for tidal deceleration, dynamic ellipticity, and climate friction. (Mars insolation also available!) (Institut de Mécanique Céleste, Bureau des Longitudes, Paris). [FORTRAN.]

(8) Other useful tools

    Dendrochronological Software--processing and time series analysis of tree ring series (University of Arizona). [Matlab.]
    CalPal--Radiocarbon calibration and paleoclimate research package (Cologne). [PC-Processor 586 (300 MHz), Win 9x/NT/2k.]
    CALIB Radiocarbon Calibration--Radiocarbon calibration (University of Belfast and Univ. of Washington). [MS Windows, Linux and Mac.]
    OxCal--radiocarbon calibration and analysis of environmental stratigraphy (Oxford). [Windows.]
    PAST--Data analysis package aimed at paleontology. Includes common statistical, plotting and modelling functions, time series analysis, RASC and CONOP procedures (University of Oslo). [Windows.]

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