Research Interests
Biochemistry and Enzymology,
Synthesis of Nucleic Acid Derivatives, Proteomics
We are currently studying the Nudix hydrolase family of enzymes. This
is a large, widely distributed class of proteins that we have
discovered having the common signature sequence:
GX6EX7REUXEEXU (U= Ile, Leu, or Val)
At present, over 600 members of the family
have been identified in more than 200 species by BLAST searches
of the data banks, and this number is increasing daily. We are
system-atically cloning selected members of the family, expressing
them in E.coli, purifying
the proteins and attempting to identify their function. This
seemingly difficult task has been made practicable by our discovery
that the common feature of the substrates of these enzymes is
that they are all Nucleoside diphosphates linked to some other
moiety, x, hence
the acronym, Nudix.
These enzymes can be thought of as surveillance proteins, because
their substrates are either potentially toxic to the cell, are
signaling molecules, or intermediates whose concentrations require
modulation durrng cellular metabolism.
Representative
Publications
Xu W, Dunn CA, O'handley SF, Smith DL, Bessman MJ (2006). Three New Nudix Hydrolases from Escherichia coli. J Biol Chem. 281(32):22794-8.
Edelstein PH, Hu B, Shinzato T, Edelstein MA, Xu W, Bessman MJ (2005 ). Legionella pneumophila NudA Is a Nudix hydrolase and virulence factor.
Infect Immun. 73(10):6567-76.
Urick T, I-Chang C, Arena E, Xu W, Bessman MJ, Ruffolo CG (2005 ). The pnhA gene of Pasteurella multocida encodes a dinucleoside oligophosphate pyrophosphatase member of the Nudix hydrolase superfamily. J Bacteriol. 2005 Aug;187(16):5809-17
Ranatunga, W., Hill, E.E., Mooster,J. L.,, Holbrook, E. L., Schulze-Gahmen,
U., Xu, W-L., Bessman, M. J., Brenner, S. E., Holbrook, S. R. (2004).
Structural Studies of the Nudix Hydrolase DR1025. From Deinococcus
radiodurans and its Ligand Complexes. J. Mol. Biol. 339, 103-116.
Xu, W.-L., Dunn, C.A., Jones, C. R., D'Souza, G., Bessman, M. J. (2004).
The 26 Nudix Hydrolases of Bacillus cereus, a Close Relative of Bacillus
anthracis. J.Biol. Chem. 279, 24861-24865.
Xu, W.-L., Shen, J-Y. , Dunn, C. A. , Bessman , M. J. (2003). A New
Subfamily of the Nudix Hydrolase Superfamily Active on 5-methyl-UTP (riboTTP)
and UTP.J. Biol. Chem. 278, 37492-37496.
Kang, L.-W., Gabelli, S. B., Bianchet, M. A., Xu, W-L., Bessman, M. J.
and Amzel,L. M. (2003). Structure of a Coenzyme A Pyrophosphatase from
Deinococcus radiodurans : a Member of the Nudix Family. J. Bacteriol. 185, 4110-4118.
Perraud, A.-L., Shen, B., Dunn, C. A., Rippe, K., Smith, M. K., Bessman,
M. J., Stoddard, B. L., and Scharenberg, A. M. (2003). NUDT9, a Member
of the Nudix Hydrolase Family, Is an Evolutionarily Conserved
Mitochondrial ADP-ribose Pyrophosphatase. J. Biol. Chem. 278, 1794-1801.
Xu, W.-L., Gauss, P., Shen, J.-Y., Dunn, C. A. and Bessman, M. J.
(2002). The Gene, e.1(nudE.1), of T4 Bacteriophage Designates a New
Member of the Nudix Hydrolase Superfamily Active on Flavin Adenine
Dinucleotide , Adenosine (5')triphospho(5')adenosine, and ADP-ribose.J. Biol. Chem. 174, 23181-23185.
Bessman, M. J., Walsh, J. D., Dunn, C. A., Swaminathan, J., Weldon, J.E. and Shen, J.
(2001). The Gene ygdP,
Associated with the Invasiveness of Escherichia coli K1, Designates a Nudix Huydrolase, Orf176, Active on Adenosine
(5')-Pentaphospho-(5')-Adenosine (Ap5A). J. Biol. Chem. 276, 37834-37838.
S.B. Gabelli, M. A. Bianchet, M. J. Bessman and L. M. Amzel, (2001). The Structure of ADP-ribose pyrophosphatase reveals the
structural basis for the versatility of the Nudix family. Nature Structure 98, 467-472.
A. L. Perraud, A. Fleig, C.A. Dunn, L. A. Bagley, P. Launay, C. Schmitz. A. J. Stokes, Q. Zhu, M. J. Bessman, J.-P. Kinet
and A. M. Scharenberg (2001). ADP-ribose gating of the calcium-permeable LTRPC2 channel revealed by Nudix motif homology.Nature 411, 595-599.
W.-L. Xu, J.-Y. Shen, C. A. Dunn, S. Desai and M. J. Bessman, (2001). The Nudix Hydrolases of Deioncoccus radiodurans.Mol. Micro. 39, 286-290.
S. F. O'Handley, C. A. Dunn and M. J. Bessman (2001). Orf135 from Escherichia coli is a Nudix Hydrolase Specific
for CTP, dCTP, and 5-Methyl-dCPT. J. Biol. Chem. 276, 5421-5426.
W.-L., Xu, C. A. Dunn and M. J. Bessman, (2000). Cloning and Characterization of the NADH Pyrophosphatase from Caenorhabditis
elegans and Saccharomyces cerevisiae, Members of a Nudix Hydrolase Subfamily. Biochem., Biophsy. Res. Communs. 273, 753-758.
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