This is a list of useful weblinks that are of use to molecular biologists.
Chick Genomics Resources
ARKdB.org -farm animal database hosted at the Roslin bioinformatics group
Avian net at Purdue
Biol.net
Chicken variation database
Chick Genome newsletter
Chick EST dB - Database from BBSRC (UK) with useful EST info and RNAi
ChickNet - chicken genome
Chicken Genome mapping
Geisha- g. gallus EST and in situ hybr.
GSC - chicken genome
PCR primers - PCR primers designed using published chicken gene sequence
UCSC Genome browser -BLAT search & genome browser
US Poultry Genome Project - genome
University of Delaware - chick EST dB
UD Genome
TIGR- genome sequences
Physical Map
The RCAS System
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Morpholino, miRNA & RNAi
Ambion useful info about RNAi
Chick.umist -RNAi for chicken sequences
Database of siRNA's -@ the Karolinska Institute
Dharmacon - RNA technologies
IDT - Integrated DNA technologies
Genesis special issue -Morpholinos
siRNA Literature
Morpholino review
Oligoengine
Promega siRNA designer -tool for designing siRNAs
pSilencer -insert design tool- for hairpin and overhang into pSilencer expression vectors
siDirect2.0 - siRNA prediction - works for human, mouse, rat, dog & chicken
Decor - siRNA prediction program - also works with mouse, rat, human, chick & zebrafish
MIT siRNA and hairpin tools and links
Other RNAi links



Library resources
PubMed- NCBI, entrez, Blast, etc.
Welch Medical Library
DNA Tools
BLAST- Genome comparison tool
BLAT search - UCSC Genome browser
Embl-Sequence analysis
Embl-harvester
Ensmbl-Genome Browser
GeneMapAnnotator- geneMAPP annotator and pathway profiler
OMIM- genomic disease database
Primer3 - oligonucleotide design tool
PrimerX - primer design for site directed mutagenesis
Primer resources - other resources for designing oligonucleotides
PCR primer Stats - resource for calculating melting temp of oligo's, GC content, and many sequence manipulation functions
Pipmaker- PipMaker and MultiPipMaker sequence alignments
UNIGENE- Human gene sequences
IMCB - FUGU Genome project- more sequnce data for Fugo rubripes
Fugu Ensemble- a joint project between IMCB and the EMBL-EBI to produce automatic annotation of Fugu Genome.
JGI Fugo- sequnces for Fugo rubripes
Fugu Ensemble- a joint project between IMCB and the EMBL-EBI to produce automatic annotation of Fugu Genome.
Regulatory sequence identification- "Nature"- Bioinformatics for the bench biologist
Protein Tools
InterProScan- motif finder.
Prosite- motif finder.
Signal Scan- Web service.
SignalP 3.0- Signal sequence prediction tool.
T-coffee- protein multiple alignment
Expasy - Expert Protein Analysis system
other Tools
jambw tools a few useful conversion tools &
IHOP - information hyperlinked over proteins
ClustalW- multiple sequence alignment
ReadSeq- sequence format converter
Repeat Masker- Utility for identifying nucleotide repeats.
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Gateways
123 Genomics -lots of weblinks
Pevsner Lab Webpage -tons of web links
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Eye Specific
NEI-Bank